Mapping Ponds with BioBase

As an addendum to our blog series on rapid, portable applications we wanted to experiment with a “thru-hull” mount of the 83/200 khz Lowrance HDS transducer on a kayak for mapping storm water retention ponds in an urban area of Minnesota (City of Maple Grove).  Electrician putty (sold as “Duct Seal”) available for a few dollars at the neighborhood hardware store worked as a perfect medium for this application.  Follow the series of pictures and captions to see how this worked!

Electrician putty or “Duct Seal” available at most hardware stores can be used for shoot “thru-hull’ applications on kayaks or canoes

 

Figure 2. A 83/200 Lowrance skimmer transducer secured to the hull of a polyethylene kayak by duct seal putty. Care should be taken to remove all air bubbles from the mold before pressing in the transducer
James Johnson from Freshwater Scientific Services LLC gets his Lowrance HDS-5 all set to log data.
Tracks showing a concentric circle approach toward mapping ponds smaller than 10 acres.  This one is 3 acres located in an urban area of Minnesota near Minneapolis (Maple Grove).  Data took 30-min to collect
Blue-scale bathymetric output created after 10-minutes of data processing time by BioBase servers after upload.  Map was produced by 1,000 passively acquired GPS and bottom points.  All map outputs (e.g., water volume or hardness – next picture) can be analyzed in your private BioBase online account or exported to GIS for more sophisticated data analyses and layering
Bottom hardness automated output automatically created along with bathymetric and aquatic vegetation layers  in BioBase.  Areas that are maroon represent hard areas that remained from the original construction of the pond.  Soft areas are represented by the lighter brown colors and represent sand deltas from parking lot runoff.  Hardness and bathymetric outputs can be used to assess whether storm water retention ponds require maintenance and where specifically to focus efforts

 

New BioBase Website and Mapping Dashboard

 

At BioBase, ease of use, organization, and user experience are top priorities.  We recognized that our old site wasn’t the best it could be, so over the last few months the website and dashboard have been rebuilt from scratch.  We’ve listened to all the questions our customers had and attempted to incorporate all of these into the new dashboard.   The result is a sleek, user friendly dashboard with a great user experience.  It’s fast and has the features to sort, organize, and use the important data you upload to your account for automated processing.  Now you can maximize your BioBase experience!

New features include:

  • Tagging – You are now able to add descriptive tags to each of your trips for better sorting
  • Improved Search Capabilities – search all categories generally by user last name, lakes, and even tags
  • Collapsing Trip Organization by Lake – Trips are categorized by lake in the dashboard and only loaded when you want them
  • Trip Track Quick View – Each trip in the dashboard provides a snapshot of where your track is on the water body for quickly identifying a survey area
  • Sort by Date – Trips can be filtered by date range so you’re only looking at the trips you want to see
  • Advanced Searching – This feature will allow you to sort by a specific category like file name, tags or water bodies
  • Support Tab – Many of the methods that we blog about are now available as PDFs and step-by-step Powerpoint documents in your account
  • Trip Support Request – Quick boxes within each trip allow you to communicate your questions directly to QC experts for a specific file or merge
  • Overall cleaner look for a better user experience!

This dashboard should be much easier to use and was designed so the things you are looking for are right where they should be.  We’re always interested in hearing from you so please log into your account and check out!  Let us know what you think and if you have questions about any of the new, powerful features

Detect Change in Your Lake Before it’s Too Late!

Citizens all over the globe love their lakes and go to great lengths and spend lots of money to protect and manage them.  In the US, the Environmental Protection Agency supports a multitude of State, Local, and citizen efforts to monitor water quality in lakes and has implemented a rigorous National Lakes Assessment.  Despite these efforts, lakes across the nation continue to be impacted from runoff pollution and invasive species proliferation under our noses. How does this happen?

Continue reading “Detect Change in Your Lake Before it’s Too Late!”

Guest Blog: BioBase and Arctic charr habitat in Windermere, U.K.

By Dr. Ian J. Winfield and Joey van Rijn

The Arctic charr (Salvelinus alpinus) is well appreciated as an important fisheries species in many northern areas of the world.  In addition, it is equally important to evolutionary biologists because of this species’ frequent development of ‘morphs’ or ‘types’ and their bearing on our understanding of mechanisms of speciation (Figure 1).  In the U.K., this fascinating fish is also recognised as having great nature conservation value.

Figure 1.  A female (top) and male (bottom) Arctic charr from Windermere, U.K.  Photo courtesy of the Center for Ecology and Hydrology)

Windermere is England’s largest lake and has been at the forefront of several areas of Arctic charr research for many decades, with the notable exception of studies of their spawning grounds (Figure 2).  Despite their long appreciated significance for the coexistence of autumn- and spring-spawning Arctic charr types, local spawning grounds have not been studied in any detail since their original brief description in the 1960s.  At that time, laborious and spatially-limited direct observations by divers showed that spawning requires the availability of gravel or other hard bottom habitat.  New information on these critical areas is needed by ecologists and evolutionary biologists and, more urgently, by fisheries and conservation organisations responsible for the management of Windermere.

Figure 2.  Breathtaking view of Windermere’s north basin; home to several spawning populations of Arctic charr.  Photo courtesy of Dr. Ian Winfield.

We are currently using the newly developed bottom hardness capability of ciBioBase to survey and characterise the spawning grounds of Arctic charr in Windermere.  Limited underwater video is being used for ground-truthing, but the combination of a Lowrance™ HDS-5 sounder with ciBioBase is allowing us to investigate the known spawning grounds with unprecedented speed (Figure 3).  For the first time, we have been able to document in detail the bathymetry and bottom features of a long-monitored (for spawning fish) spawning ground just north of the island of North Thompson Holme in the lake’s north basin.  ciBioBase is also enabling us to examine other known spawning grounds in Windermere and to expand our coverage to other potential areas previously unstudied.

Figure 3. An example ciBioBase output of bottom composition on and around the Arctic charr spawning ground of North Thompson Holme in the north basin of Windermere

The rapidity of the field component of hydroacoustic surveys is well known.  ciBioBase now offers us a similarly fast method of hydroacoustic data analysis for key environmental characteristics in relation to the spawning of Arctic charr.  This new approach helps us to dramatically increase our return on investment and also allows us to review results within hours of coming off the water, leading in some cases to us adapting our field plans on the basis of initial results.

Dr. Ian J Winfield is a Freshwater Ecologist at the Centre for Ecology & Hydrology in Lancaster, U.K.  He has over 30 years of research experience in fish and fisheries ecology, hydroacoustics, and lake ecosystem assessment and management.  Dr. Winfield sits on several regional, national and international advisory boards and is the current President of the Fisheries Society of the British Isles (FSBI).

Joey van Rijn is an undergraduate student currently following a BSc. degree course in Applied Biology at the University of Applied sciences, HAS Den Bosch, in the Netherlands. He is experienced in ecological and particularly phenological research including work on temperature-induced differences between urban and rural areas in the timing of blossoming and leaf unfolding in shrubs.  He has also been involved with the development of fish ways for standing waters in the Netherlands. Joey is currently undertaking a research internship at the Centre for Ecology & Hydrology in Lancaster, U.K., where his research mainly focuses on using hydroacoustics to investigate Arctic charr spawning grounds in Windermere.

GPS Accuracy Test of Lowrance HDS


At BioBase we put Lowrance HDS to the test for GPS precision and accuracy.  We know the importance of accurate maps but also recognize that “consumer-off-the-shelf” doesn’t mean it won’t provide the type of accuracy needed for accurate acoustic mapping.  The question lies more in how precisely accurate we can map aquatic environments with a “survey-grade” versus consumer GPS.  There are a lot of considerations when mapping from the surface of a water body.  Not only the accuracy of the GPS signal itself but the movement of a survey vessel on a liquid surface, wind, number of points surveyed, survey design, depth, acoustic cone degree, etc.  The list goes on because plants grow, you’re usually in a boat and water moves.  But, we can still investigate the precision of the WAAS corrected GPS from Lowrance HDS.  We were happy with our test results . . . but not surprised!

Units Tested:
  • Trimble GeoXH 6000 Series (post processing DGPS correction to 12” accuracy and precision)
  • Lowrance HDS-5 (WAAS-Correction Enabled)
  • Lowrance HDS-7 Gen2Touch (WAAS-Correction Enabled)

 

Methods:
  • Two individuals recording tracks while walking in same footprints, units held at chest level
  • One individual recorded a track with the Trimble Unit while the other held the HDS
  • Process repeated with the Trimble and HDS7 Touch
  • Data collected in a 2-acre soccer field in Minneapolis surrounded by trees
  • GPS Track lines from both units were uploaded to ArcGIS and converted to points
  • Point layers from both units were spatially joined and distance from each HDS track point to the nearest Trimble GPS track point was calculated
  • Conditions: Clear skies and HDOP (Horizontal Dilution of Precision) was less than 3
  • Testing Completed March 14, 2013

 

One glaring item that can be pulled from the chart above is the accuracy of the Trimble unit before DGPS correction.  Published accuracy is much different than actual accuracy.  You can see from the numbers above that the DGPS correction didn’t adjust the Trimble track by much. When compared against the static HDS output, the comparison hardly changes (from an average difference of .71m between the HDS7 Touch and Trimble™ DGPS before correction to .69m after correction and .45m to .83 respectively for the HDS5).  Even after DGPS correction, both HDS units performed extremely well with significantly less than 1m average difference between tracks (.69m for HDS7 Touch and .83 for the HDS5).
At Contour Innovations we’re focused on best and uniform geostatistical models, acoustic processing, number of data points, and other key standard operating/data collection procedures to create good maps.  The average difference shown in the chart above could even be significantly less than the size of your acoustic cone (depending on cone angle and depth).  Spacing of your sample points is also very important.  The Lowrance HDS system records up to 20 pings per second.  The precision and accuracy of a map created from such voluminous data sets is unmatched.  When analyzing this much data during your survey the geostatistical model and spatial references are substantially improved.

 

Geo-statistical algorithms:  No acoustic map is made up of a complete data set.  Data sampling points with less that 100% coverage still require a statistical model of extrapolation or interpolating of neighborhood points.  All aquatic maps are created with some level of geo-statistical model like kriging.  Ensuring accuracy of actual points will help decrease error coefficients of estimated data but more important is the type of geo-statistical model and spacing between data sampling sights.  There is a positive correlation of error coefficient and transect spacing.  We recommend transect spacing of less than 50m and even higher resolution and lower spacing depending on mapping objectives.

 

Geostatistics is a branch of statisticsfocusing on spatial datasets originally developed to predict probability distributions.  A number of simpler interpolation methods/algorithms, such as inverse distance weighting, bilinear interpolation and nearest-neighbor interpolation, were already well known before geostatistics, but it goes beyond the interpolation problem.  Kriging, the model we use, is a group of geostatistical techniques used to interpolate the value at an unobserved location from observations of its value at nearby locations.  This means that as you collect data along a transect, those data can be used to predict unobserved data between points to a statistically significant probability.  A good geostatistical model and the number of sample point are key to a complete and accuracy map!
A couple things to consider that could influence the accuracy and precision of your maps:
  • Pitch, Roll and Yaw – Wave action or other movements of the boat as you take a physical samples
  • Tree Cover – which isn’t as common when mapping open water like lakes
  • Relation of GPS antennae to transducer – Even with 12 inch DGPS accuracy, if you’re standing 3 feet from your transducer your data points will be off.  If you take a core sample and enter the results into a GPS device, your boat could easily have drifted a lot more than your potential error.   With Lowrance HDS we provide an external antennae that can be mounted directly above your transducer so your data collection is happening at the point spot of your GPS signal.
  • Overall Survey Design – The spacing of your transects is key as it relates to the ability to confidently make predictions in unsampled locations with your geo-statistical model. 
  • Speed of Travel – When looking at a wide range of data collection techniques and methods, speed is always the biggest consideration for accuracy and coverage.

 

“Published Accuracy” is much different than actual accuracy.  A lot of this is a guarantee from the manufacturer to be less than a certain error threshold at least 60% of the time and is not a minimum.
Because of this, there’s an opportunity to use scare tactics to discount the power of an off-the-shelf acoustic unit or GPS.  But, as we’ve described here, there’s a lot that goes into making a map!
We were very impressed with the performance of the WAAS corrected Lowrance™ HDS when compared against a system like the differentially corrected Trimble™ unit.  Though, we can’t say we’re surprised!
For more information on getting the best and most accuracy maps please contact one of our fisheries biologists and GIS experts.
Lowrance™ and Trimble™ are registered trademarks of Navico, Inc. and Trimble Navigation Limited respectively.  Neither Company contributed, authorized, or requested this testing.       

Legacy applications of commercial sonar

At Contour Innovations we stand on the shoulders of giants who proved commercial depthfinders are precise scientific instruments for the measurement of aquatic plant abundance and distribution in lakes.   As early as 1980, researchers saw the potential for fathometers/chart recorders/depth finders/sonar/echosounders – whatever you want to call them – to substantially reduce time, effort, and cost in assessing aquatic plant communities in lakes (Maceina and Shireman 1980).

The commercial sounders of the 1980’s had only a fraction of the power and resolution of what Lowrance manufactures today (not to mention integration with GPS) and investigators still boasted of the quality and cost-effectiveness of the data acquired.  Here are some excerpts:

Maceina and Shireman (1980): “The principle advantage of utilizing a recording fathometer for vegetation surveys is that savings in time and manpower can be accomplished.  In Lake Baldwin, 14 transects covering a total distance of 11.3 km were completed in three hours.” p 38.

Duarte (1987): “Direct harvesting is an expensive and time-consuming procedure (see Downing and Anderson 1985).  Two SCUBA divers require 20 min on average to harvest the biomass of six replicate quadrats at a single depth.  In contrast, six replicate echosounder transects require only 8-35 min to obtain biomass estimates for all depths, with the actual time required dependent on the littoral slope and the depth to which the plants grow.  Additional advantages of the echosounder method are (1) a continuous record of the vegetation, rather than at discrete depths only, with the latter resulting in inaccuracies when the mean biomass values are estimated, (2) nondestructive sampling, which allows monitoring of the growth of stands over time and (3) simultaneous recording of other variables such as percent cover (Stant and Hanley 1985), volume occupied by the submerged vegetation, and littoral slope (Duarte and Kalff 1986), which influences macrophyte biomass.” p. 734

In fact, Duarte (1987) publishes biomass prediction equation from acoustic estimates of plant height (a ciBioBase output) for 22 aquatic plant species.

Thomas et al. (1990): “Fortunately, shallow range (0-7 m) chart recorders are standard on many low cost (less than $400) commercial echosounders, so the data acquisition equipment costs are relatively low with respect to fisheries acoustic assessments, which makes this procedure relatively nontechnical and very cost effective” p. 810

The concept of using commercial acoustics for mapping lake bottoms is established and proven.  Contour Innovations has refined, streamlined, and automated the methodology with ciBioBase and delivers an intuitive visualization of the complex underwater world we call littoral zones.

A Raytheon DE-719 “fathometer” relic when plant biovolume was measured on paper charts with the use of planimeters.  Photo from www.euronet.nl.
Paper chart from a Raytheon DE-719 displaying dense hydrilla canopies and bottom in a central Florida lake.  Reproduced from Maceina and Shireman 1980; J. Aquat. Plant Manage.

Classic Literature
Duarte, C.M. 1987. Use of echosounder tracings to estimate the aboveground biomass of submerged plants in lakes. Canadian Journal of Fisheries and Aquatic Sciences 44: 732-735

Maceina, M and Shireman, J. 1980. The use of a recording fathometer for determination of distribution and biomass of Hydrilla. Journal of Aquatic Plant Management 18:34-39.

Maceina, M.J., Shireman, J.V., K.A. Langland, and D.E. Canfield Jr. 1984. Prediction of submerged plant biomass by use of a recording fathometer.  Journal of Aquatic PlantManagement 22: 35-38.

Stent, C.J. and Hanley, S. 1985. A recording echosounder for assessing submerged aquatic plant populations in shallow lakes. Aquatic Botany 21: 377-394

Thomas, G.L., Thiesfeld, S.L., Bonar, S.A., Crittenden, R.N., and Pauley, G.B. 1990. Estimation of submergent plant bed biovolume using acoustic range information. Canadian Journal of Fisheries and Aquatic Sciences 47: 805-812.

Is StructureScan worth it? You be the judge

Debating whether it’s worth the upgrade to the new HDS7 Gen2 Touch StructureScan bundle?  Outside of the bigger screen and more intuitive touch technology than its older generation HDS5 sibling, the imagery produced by StructureScan should be reason enough!
Below are the same areas of a lake in Minnesota using the traditional 200 khz signal (top) and the 455 khz DownScan add-on (bottom).  A school of fish hovering over Eurasian watermilfoil plants is clearly resolved in the bottom image.  The wider cone angle of the traditional signal cannot adequately resolve these minute features.  BioBase leverages both signals to produce accurate map data sets and reproduce spatially explicit imagery for plant cover typing.  Contact us if you would like to know more about HDS features or are interested in purchasing a unit

Lowrance GPS Accuracy: Seeing is believing!

A quick post to demonstrate the precision of Lowrance’s internal WAAS corrected GPS antennae is in a variety of open water environments.  Docks? Boat lifts? Overhanging trees?  No problem.  WAAS correction in North America is explained here.  Have a look at a couple examples in ciBioBase:

GPS Track from a Lowrance HDS on Newport Bay, California overlain onto a bathymetry map created by automated processing of the Lowrance .sl2 log file by ciBioBase.  This trip was used for water volume calculations, bathymetry, and vegetation mapping

GPS tracks and ciBioBase derived bathymetry map in a 3-acre pond in a wooded valley in a metropolitan area of Minnesota, an example of retention pond volume monitoring.

GPS tracks and ciBioBase derived contour map of a 3-acre pond in Illinois for water
volume and aquatic vegetation analysis

GPS tracks around docks and boat lifts and ciBioBase derived contour map on Grand Lake O the Cherokees near Tulsa  Oklahoma.  The satellite even shows data collection in an area where a boat can be moored next to the dock.  That’s close!

Patterns of aquatic plant species domination

In an earlier blog post, we informed you of collaborative research in which CI is involved.  We’ve touched on how species presence/absence surveys using methods like point-intercept and full system acoustic surveys of abundance can be combined to fully understand the dynamics of aquatic plant communities and how they are responding to range of “forces.”  These forces may be natural like seasonal or interannual variability, human induced but unintentional like accelerated eutrophication, or the introduction of invasive species, or intentional management interventions to control nuisance aquatic plant growth.  Whatever the case, entire lake ecosystems are likely to be affected these forces including plant species composition, abundance, and spatial patterns of plant growth.

We can generally expect a bell curve-like response of plant growth at differing levels of productivity (Figure 1).  In nutrient-poor oligotrophic lakes, aquatic plants are typically never very abundant because of nutrient limitations or sediment hardness.  At the other side of the spectrum in overly productive or hypereutrophic systems, the lake is often too murky from algae growth or sediment suspension to support much plant growth.  Goldilocks finds her sweet spot in moderately productive meso- or eutrophic lakes (Figure 1).  The cumulative effects of various stressors continually move the ball towards the right of the productivity curve where thresholds are being approached and sometimes breached.  We’ve spoken about this resilience issue also in a previous post.

Figure 1. Conceptual model describing general patterns of aquatic plant abundance  in  shallow to moderately  deep lakes as a function of lake productivity.  O = Oligotrophic or low nutrient levels; M = Mesotrophic or moderate nutrient levels; E = Eutrophic or high nutrient levels; HE = Hypereutrophic or really high nutrient levels.

Likewise, we could replace the Y-axis in Figure 1 with Species Richness and we’d have the same conceptual model and predictions for how lakes should respond to environmental or human stressors.  Maybe this brings back memories of the Intermediate Disturbance Hypothesis a la Connell (1978) for our readers with an academic history in Ecology?

Having understood these patterns, researchers and managers have done much work to assess aquatic plant communities, make prescriptions on their management or conservation, and evaluate outcomes of management efforts.  Still, assessment techniques have generally been focused either on species occurrence patterns or gross plant abundance patterns but rarely both, and especially at the whole-lake scale.
For instance, the point-intercept method has been used to describe species occurrence patterns in many systems throughout the upper Midwestern US (Madsen et al. 2002, Beck et al. 2010, Mikulyuk et al 2010, Valley and Heiskary 2012).  Indeed, this work and many other studies not cited here has contributed great knowledge on factors contributing patterns of what species grow where.  But they can’t tell us “how much.”
In contrast, hydroacoustics assessments of plant abundance has shed light on how various factors affect patterns of plant abundance in lakes (Valley and Drake 2007, Winfield et al. 2007, Zhu et al. 2007, Sabol et al. 2009, Netherland and Jones 2012).  So hydroacoustics can tell us “how much” but generally not what species grow where unless you are dealing with monocultures.
Duh! Combine results from both methods!
Although it seems obvious regarding the proper solution, prior to today, there were many budget and technological difficulties that made combining both species and abundance surveys at the whole lake scale not very feasible.
Most of these barriers were with the acoustic techniques.  Equipment was costly, it required a lot of specialized training to operate and make sense of the data, you needed powerful computers and a lot of data storage capacity.  
Innovations in acoustic and computing technology has smashed these barriers and now valuable high resolution data on aquatic plant abundance can be logged passively to a $650 depth finder while you conduct your species occurrence surveys.  When you return from the field, just add “upload sonar data” to your list of things to tidy up before heading home for dinner.  30-min later all the abundance data will be waiting in the queue to be combined with your frequency of occurrence species data.
Combining point-intercept and acoustic data into meaningful statistics
In our point-intercept on steroids post we described how to append a biovolume column to your point-intercept data file.  In this investigation we have now taken matters to the next step and defined a potentially useful metric (Dominance) and evaluated its utility across several Minnesota and Wisconsin Lakes and one natural North Carolina Lake (Table 1).
Table 1.  Lakes part of a collaborative study demonstrating a technique for quantifying the impact of individual species on plant abundance patterns.  Zmax = max depth in feet; Prod. = productivity as described in Figure 1.  Invasive plants include Eurasian watermilfoil (EWM), Curly-leaf pondweed (CLP), and Hydrilla (HYD).
What we define as Dominance is a metric that ranges from 0 (no plant growth at all) to 1 (surface growth of one species).  The number of species combined with the biovolume at a survey point determines the dominance value.  So at each survey point:
Species1 / Total Species* x Biovolume = Dominance
*Excludes emergent and free-floating species
This means that 10 species sampled at point X with a biovolume of 100% only gets a value of 0.1.  In many natural glacial lakes, surface growth of aquatic plants is common in shallow areas, but typically, many species contribute to the local assemblage.  In a disturbed or invasive dominated lake, surface growth is common but usually only 1-2 species (e.g., D = 1 and 0.5 respectively) contribute to these dense beds.
Figure 2 demonstrates what we find in lakes that range from oligotrophic, uninfested lakes to borderline hypereutrophic infested lakes.
Figure 2. Patterns in aquatic plant growth in lakes that span a range of productivity (ordered from left to right – see Figure 1 for productivity definitions).  BVw is the average total biovolume in the surveyed areas generated from ciBioBase grid reports. Freq. Monocultures is the frequency of species survey points that had only 1 or 2 species and growth was near the water surface.  BV Natives is the biovolume of species survey points where only native submersed or floating leaf plants were growing.  BV Invasives is the biovolume at sites with invasive species present.
First, with the exception of bog stained Waccamaw that naturally depresses plant growth, the overall abundance of plants as expressed as average biovolume (Blue bars- BVw) by in large follows the bell shaped curve in Figure 1.  Second, the biovolume where only native plants grow is pretty stable across all lake types (again excluding Waccamaw) and invasives (in this case Eurasian watermilfoil) push the biovolume higher.  This patterns of biovolume at surveyed points give us another quantitative indicator about the actual impact of invasives and could serve as a benchmark for management objectives.  Third, the red bars tell us how frequent during each survey we saw surface growing beds of one species.  Interestingly, the frequency increases as the lakes become more productive with invasive plants.
Lake Wingra – an extreme example of Eurasian watermilfoil domination

Lake Wingra is a shallow, eutrophic lake near the campus of University of Wisconsin in Madison, Wisconsin.  Wingra resides in an urban watershed and the lake today is a reflection of a long legacy of watershed and in lake impacts from high runoff, sedimentation, and invasive species proliferation such as common carp and Eurasian watermilfoil.  More information on this lake can be found here.
Today, the lake is dominated by Eurasian watermilfoil (there’s that word again: dominated).  What we are doing now is putting numbers behind this descriptive word so the situation can be improved.
So what does “domination” mean in Wingra?  It means that 50% of the sampled points in the lake had only Eurasian watermilfoil or one other species growing to the surface (Figure 2).  It means that 130 acres of the 281 total acres mapped (45%) were essentially surface-growing monocultures of Eurasian watermilfoil (Figure 3).  These represent objective benchmarks that form the foundation of solutions.  It’s probably not a stretch to assume that 129 acres of surface growing Eurasian watermilfoil is not desirable.  With the tools described here local managers and citizens can work out what is desirable and take measures to get there.  But getting there requires objective, repeatable assessment methods that shed light on both species AND abundance patterns.
Figure 3.  Contours (yellow) delineating the extent of surface-growing Eurasian watermilfoil  beds on Lake Wingra (Dane Co. WI).  The background map is a heat map of aquatic plant biovolume collected with a Lowrance HDS-5 and processed with ciBiobBase.  Areas of red is vegetation growth near the surface.  The few red areas outside of the yellow contour lines represent areas where 1 or more native species contributed to the surface growth.

The future: national risk assessment models
Contour Innovations is currently developing data import capabilities to overlay species surveys on ciBioBase maps.  This will have immediate local benefits for our clients, but the real power of such functionality is the building of a powerful national database of species and abundance surveys.  This can lead to independent research efforts to model aquatic plant growth patterns and model risk of certain aquatic systems to domination by an invasive aquatic plant species.  But a critical mass of cooperation by the water and fisheries resource community including academia and public and private institutions is needed to develop robust models.  Contact us if you are interested in being a part of this effort.  We will be taking this concept to the road at the Midwest Aquatic Plant Management Society meeting in Cleveland, Western Aquatic Plant Management Society in Idaho, Minnesota Chapter of the American Fisheries Society in St. Cloud MN and other to be determined venues.
Ray Valley
Chief Aquatic Biologist
Literature Cited
Beck, M. W., L. Hatch, B. Vondracek, and R. D. Valley. 2010. Development of a macrophyte-based index of biotic integrity for Minnesota lakes. Ecological Indicators 10:968-979.
Connell, J. H. 1978. Diversity in tropical rain forests and coral reefs. Science 199:1302–1310.
Madsen, J. D., K. D. Getsinger, R. M. Stewart, and C. O. Owens. 2002. Whole Lake fluridone treatments for selective control of Eurasian watermilfoil: II. impacts on submersed plant communities. Lake and Reservoir Management 18:191–200.
Mikulyuk, A., J. Hauxwell, P. Rasmussen, S. Knight, K. I. Wagner, M. E. Nault, and D. Ridgely. 2010. Testing a methodology for assessing plant communities in temperate inland lakes. Lake and Reservoir Management 26:54–62. doi: 
Sabol, B. M., J. Kannenberg, and J. G. Skogerboe. 2009. Integrating Acoustic Mapping into Operational Aquatic Plant Management : a case study in Wisconsin. Journal of Aquatic Plant Management 47:44–52.
Valley, R. D., and M. T. Drake. 2007. What does resilience of a clear-water state in lakes mean for the spatial heterogeneity of submersed macrophyte biovolume? Aquatic Botany 87:307–319.
Valley, R. D., and S. Heiskary. 2012. Short-term declines in curlyleaf pondweed in Minnesota: potential influences of snowfall. Lake and Reservoir Management 28:338–345.
Winfield, I. J., C. Onoufriou, M. J. O’Connell, M. Godlewska, R. M. Ward, A. F. Brown, and M. L. Yallop. 2007. Assessment in two shallow lakes of a hydroacoustic system for surveying aquatic macrophytes. Hydrobiologia 584:111–119.
Zhu, B., D. G. Fitzgerald, S. B. Hoskins, L. G. Rudstam, C. M. Mayer, and E. L. Mills. 2007. Quantification of historical changes of submerged aquatic vegetation cover in two bays of Lake Ontario with three complementary methods. Journal of Great Lakes Research 33:122–135.

An Unfair War with Aquatic Invasive Species

The Importance of Aquatic Vegetation Abundance Mapping and Long Term Monitoring from a Layman’s Perspective

 

From a layman’s point of view it can be very difficult to understand the importance of lake weeds as they relate to aquatic invasive species (AIS).  I should know . . . I’m a layman.  I started asking questions, and it turns out it’s a bit more complex than I thought.  Sure, I want the Minnesota Lakes I love to be clear with tons of fish, but do we really need these weeds?  Of course we need some “weeds” (“aquatic plants”), and, if you get rid of too many you can throw the entire lake ecology out of balance for years.  When I asked how much is a good amount and how it is being tracked in Minnesota I was disappointed with the answer.  During my time working for the software company Contour Innovations, focusing on automated lake mapping, I’ve had the pleasure of working with some of the most talented aquatic biologists in the Country, both in-house and through our customer base.  I’ve spent the last few years learning the language and attempting to catch on from a neutral, outsider’s perspective.  Slowly, I realized that the complicated topic could be effectively communicated to anyone that cares about and has an interest in water quality . . . which should technically be everyone.

Let’s face it, the DNR has done a great job demonizing invasive species for good reason and with some positive results.  There’s more awareness now and budgets in place to attempt to manage the spread and introduction.  But, eradicating AIS once introduced into a lake is only half the story.  . .
I’ve learned a lot over the last few years but I still had some questions:  Why should our customers really care about the total habitat when Eurasian Water Milfoil has already invaded their lake?  Don’t they just want to know where the Milfoil is so they can get rid of it?  If a monitoring program can’t distinguish between species does it still have a use in aquatic research or management?  I originally thought that identifying where the Milfoil is located is key, but I actually found the opposite to be true.  If we live by the idea that “AIS are bad and should be eliminated at all costs,” wouldn’t the results be easier to obtain? 
The concepts of ecosystem balance are extremely complex but vital.  After early discussions with our biologists it become clear to me that abundance is one of the most important metrics to consider when monitoring water quality and lake health.  This remains true if an invasive species has already been introduced or it’s just knocking on the doorstep.  We need to focus our analysis on total abundance and the overall aquatic habitat instead of speciation as a sole predictor of lake health.  What really matters is knowing if your lake is at risk of the negative impacts from invasive species and if your lake ecology is within certain “healthy” parameters.  A lake’s resilience to invasive species and current water quality regime is going to be a major indicator of lake health and prospects for the future.  It’s also important to quantify your management interventions and determine if they are having their desired effect.  These were difficult questions to answer in the past. 

Invasive species are coming.   We can try to stop it but more likely we’re just delaying it.  The reason these species are thriving is because they’re designed to thrive.  With the right conditions they can easily steal the resources required to grow from other plants, effectively eliminating competition from the lake.  They’re opportunistic and the microscopic amount required for infestation is astonishing.  We should accept this fact and be realistic about what we’re dealing with.  It doesn’t mean we roll over and stop the cleaning stations or citations for failing to drain your bilge, but a proactive management and monitoring plan is a good idea.   

Let’s understand our lake’s resilience and identify if it’s at risk.  Let’s get our resource managers identifying which lakes need close attention and devote our stretched budgets to the ones that need it.  The chips are already stacked against us and without good quantitative data, they’re stacked even further.   With mismanaged resources it becomes a war we can’t win.

At a certain level of productivity, an invasive species will win the war against a diverse ecological aquatic habitat and turn into a lake of a single species.  This isn’t a good thing for any lake ecosystem or water quality.  It’s all about balance and a healthy lake habitat can help keep an infestation in check.  It’s also possible that certain management techniques could push a lake towards a higher risk scenario if decisions were made without quality abundance data.  Understanding the risks of this happening are key in designing a management plan to be proactive instead of reactive.  Identifying hot spots in abundance and potential causes could be more important than identifying where the invasive species exist.  The best thing is that it’s never too early or late to start. 

The entire ecosystem is tied together.   The cumulative effect of lake stressors can lead to the low resilience required for an invasive species to thrive.  Identifying the stressors and dealing with them could prove more valuable than eliminating an invasive species.  Much like a healthy body can deal with the flu virus better than an unhealthy one, a lake with good shorelines, healthy fish communities, and healthy diversity of plant abundance can keep an infestation in check.  In certain conditions, taking plants out of the lake might be a bad decision that could have a negative effect on lake ecology depending on the lake regime and characteristics of the lake.  
In fact, there are ideal targets and optimal or idea habitat levels and conditions.  Our own Ray Valley, a 10 year veteran of the Minnesota DNR, has devoted a majority of his career to habitat monitoring and interactions between plant abundance, fish, lake resilience and relationships to water quality.  His research on ecosystem balance, namely lake resilience, is instrumental in understanding what’s really happening in a lake and when lakes are at risk.  Much of this is actually tied to plant abundance and changes over time.
Through a long term monitoring program it’s possible to identify the red flags.  Plant abundance growing at deeper depths from year to year could show an increase in water clarity allowing more light penetration.  This might be caused by a recent zebra mussel infestation or a shift in the lakes ecology.  Regardless, something as simple as the depth aquatic plants grow tells us a ton about the direction the lake is going.  In another example, unusual increases in plant abundance in specific areas could indicate, among other things, a home with a leaking septic tank on the lake, a change in the landscape, changes in sedimentation, a run-off issue or a bigger problem upstream.  All of these, left unchecked, could cause more problems for the lakes balance and resilience leading to higher risk of negative impacts of an invasive species introduction.   These changes don’t show up in a visual reconnaissance, presence/absence surveys with a rake, or a single map.   But getting these items resolved could be the management technique that keeps an invasive species from dominating a lake habitat in the future and early detection of these problems could prevent an unfair fight against AIS in the future.
Complete dominance of an invasive species is another story but it’s also the exception.  I’ve seen a number of groups continue to dump massive amounts of money into management without quantitative goals or the ability to effectively quantify the whether they are meeting their management expectations.  Maybe we’re not asking the right types of questions or maybe the technology didn’t exist to get the information we need.  No one is at fault yet.  Once the dialog shifts away from hysterical talking points and towards pragmatic management approaches, we’ll start making real strides in getting ahead of AIS and start achieving improvements in our precious lakes.

So where do we start?  With crowd-sourced solutions like ciBioBase.com we can all start getting the volume of data we really need to have this realistic and proactive discussion.  With cloud computing we’ve broadened the base of individuals that can participate allowing passionate home owner groups to take matters into their own hands instead of waiting for an understaffed DNR.   Aquatic plant abundance maps that took a highly trained hydrographer a week or more and to complete can be done by anyone with a boat, a depth finder and GPS, and 20 minutes for computers do the work of processing the collected data.  This is the future of monitoring and lake management.  There are no longer barriers to getting the kind of data we need for identifying the red flags, eliminating stressors and improving lakes across Minnesota and the globe.
So, let’s understand the lakes heartbeat first.  Let’s get a clear picture of the lakes resilience and its current status for optimal health.  Then we move forward to a future with cleaner lakes.

This article represents and aggregation of my thoughts as I’ve journeyed through this industry and tried to learn the ropes.   This is merely an appeal to think differently about our lakes, expectations, and what the future holds.  The future of our most important resource is brightest if we take a step back, think about what we’re doing and where we need to go.
 
Let’s have those realistic and proactive discussions with real data . . .
                                                         -Matt Johnson, CEO, Contour Innovations, LLC

 

CONTOUR INNOVATIONS AND CIBIOBASE

ciBioBase (ciBioBase.com) removes the time and labor required to create aquatic maps! ciBioBase leverages log file formats recorded to SD cards using today’s Lowrance™ brand depth finders and chart plotters. Data you collect while on the water is uploaded to an online account where it is processed by our servers automatically! We rely on automation to make vegetation mapping cost effective by reducing the technical skills, staff, and hours to produce vegetation abundance maps from raw sonar collection. With the human element gone, you get accurate and objective mapping at lightening speeds! The result is a uniform and objective output all over the world!
I’m proud to be a part of this step in the right direction of a positive future for lake management and overall quality of our most precious resource.  We’re shaking things up and this is a time when everyone benefits.  We work as a huge team to define the best uses and features of one of our products, BioBase, to change the lake management industry.  We’re using expert opinions and powerful cloud computing to create amazing contour and vegetation maps and gain important quantitative metrics of lake health.

Our Company has a culture that considers its social responsibility and contribution.  Our sales team is motivated by how they are changing the future of lakes and resources management.  I was most intrigued by what we might be contributing to the future of a resource that means so much to me.  I’m still intrigued!
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