Map aquatic vegetation cover with BioBase

Beginning in 2011, BioBase brought the 3rd dimension of habitat in the aquatic world. BioBase’s EcoSound™ maps not only the mere presence of vegetation, but also the canopy height and creates aquatic plant ABUNDANCE maps of unprecedented detail (Figure 1).

Figure 1. A percent vegetation heat map shows you exactly where vegetation is most dense and helps target management (e.g., invasive species) or protection (seagrass) depending on the environment and circumstance

We’ve spent thousands of words in these pages and presentations on the road extolling the importance of measuring and monitoring aquatic plant abundance to further the goals of aquatic habitat conservation. We place emphasis on the word “abundance” because it drives habitat; it drives water quality dynamics. But simply existing carries great importance as well. So while abundance is critical to know for population viability and ecosystem models, knowing whether a species is simply occupying a space regardless of its abundance is also tremendously important.

Mapping the sparse or rare? Make it POP!

Now, BioBase has a Processing Preference that allows users to create aquatic vegetation presence/absence or cover maps instead of full vegetation biovolume heat maps (Figure 2). To do this, BioBase simply reclassifies all biovolume values greater than the user-specified minimum threshold (default = 5% of the water depth) to a value equal to one (present) and areas where there was no vegetation remains equal to zero (absent). The interpolated results produce areas that are monochromatic green (e.g., high likelihood of plant occurrence) and transparent (e.g., high likelihood of plant absence). Figures 3 and 4 show a couple great real-life examples.

Figure 2. To enable the Plant Cover mapping feature in BioBase, log in and visit My Account and select Processing Preferences. Turn on the Present-Absent Vegetation Interpretation feature and upload a sonar log. If you want to reprocess previously uploaded maps to get the new feature, simply contact us by viewing the map of interest and click details – Ask the Experts and make the request. One of our staff will find your map and reprocess it with the new setting.
Figure 3a. Seagrass biovolume over a South Australian coastal area mapped with BioBase. Note the faint colors of the short-growing patchy seagrass which can be hard to see.
Figure 3b. Reprocessed map with the Presence Absence preference enabled. Areas where seagrass grows pops and are more easily identified and targeted for protection.
Figure 4a. Full biovolume heat map in a small surveyed area on the southern end of Bear Lake, Utah. Eurasian watermilfoil is present and spreading in the lake but it rarely grows very dense.
Figure 4b. Reprocessed map with the Presence Absence preference enabled makes areas where Eurasian watermilfoil might be growing more obvious.

Understand your local environment and what could impact detection accuracy

BioBase’s EcoSound uses the properties of sound waves to make inferences on whether something on bottom is “aquatic vegetation.” The technology does not do any kind of further chemical or biological testing to know whether something on bottom is a live green herbaceous plant or a decaying stick. As such, we deliberately set our biovolume or presence/absence detection threshold to a conservative 5%. Pushing this down can indeed increase the ability to map very sparsely growing plants, but it also increases the chances of false detections of things on bottom that aren’t plants. Therefore, the more ancillary information you as a practitioner know about the environment you are managing, the better informed you can be about the appropriate BioBase settings.

Sometimes simple wins

In our drive to create something that’s hard to do, like map aquatic vegetation abundance, we can sometimes overlook the easy, like simply mapping whether vegetation is there or not. We’ll take an easy feature any day…better late than never!

Author: biobasemaps

BioBase is a cloud platform for the automated mapping of aquatic habitats (lakes, rivers, ponds, coasts). Standard algorithms process sonar datafiles (EcoSound Product). Depth and vegetation maps and data reports are rapidly created and stored in a private cloud account for analysis, and sharing. This blog highlights a range of internal and external research, frequently asked questions, feature descriptions and highlights, tips and tricks, and photo galleries.

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