Consumer Sonar for Bottom Mapping: Updated Reference List

Another FAQ we get is wondering if there are published studies using BioBase technology? There are many legacy applications on which the BioBase technology is based. Further, now that a sufficient passage of years has accumulated to support the research to publication cycle, we’re happy to share several BioBase-specific studies published in the peer-reviewed literature.  We also cite some other key papers highlighting the use of consumer sonar technology for scientific research. This is far from an exhaustive list, especially with the growing body of references focusing on mapping with consumer side-scan. If there are good published papers you know of that are not on this list, please share in the comments.

Classic Literature

Duarte, C.M. 1987. Use of echosounder tracings to estimate the aboveground biomass of submerged plants in lakes. Canadian Journal of Fisheries and Aquatic Sciences 44: 732-735

Maceina, M and Shireman, J. 1980. The use of a recording fathometer for determination of distribution and biomass of Hydrilla. Journal of Aquatic Plant Management 18:34-39.

Maceina, M.J., Shireman, J.V., K.A. Langland, and D.E. Canfield Jr. 1984. Prediction of submerged plant biomass by use of a recording fathometer.  Journal of Aquatic Plant Management 22: 35-38.

Stent, C.J. and Hanley, S. 1985. A recording echosounder for assessing submerged aquatic plant populations in shallow lakes. Aquatic Botany 21: 377-394

Thomas, G.L., Thiesfeld, S.L., Bonar, S.A., Crittenden, R.N., and Pauley, G.B. 1990. Estimation of submergent plant bed biovolume using acoustic range information. Canadian Journal of Fisheries and Aquatic Sciences 47: 805-812.

Recent Literature

Sánchez-Carnero, N., Rodríguez-Pérez, D., Couñago, E., Aceña, S., & Freire, J. 2012. Using vertical Sidescan Sonar as a tool for seagrass cartography. Estuarine, Coastal and Shelf Science 115: 334–344. http://doi.org/10.1016/j.ecss.2012.09.015

Meadows, GA 2013. A review of low cost underwater acoustic remote sensing for large freshwater systems. Journal of Great Lakes Research 39: 173-182. http://doi.org/10.1016/j.jglr.2013.02.003

Netherland, M. D., & Jones, K. D. 2015. A three-year evaluation of triclopyr for selective whole-bay management of Eurasian watermilfoil on Lake Minnetonka, Minnesota. Lake and Reservoir Management 31: 306–323. http://doi.org/10.1080/10402381.2015.1085114 BioBase Paper

Newlin, J.T. and B.R. Hayes 2015. Hydraulic modeling of glacial dam-break floods on the West Branch of the Susquehanna River, Pennsylvania. Earth and Space Science 2: 229-243. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2015EA000096

Radomski, P., & Holbrook, B.V. 2015. A comparison of two hydroacoustic methods for estimating submerged macrophyte distribution and abundance : A cautionary note. Journal of Aquatic Plant Management 53: 151–159. BioBase Paper

Valley, R. D., Johnson, M. B., Dustin, D. L., Jones, K. D., Lauenstein, M. R., & Nawrocki, J. 2015. Combining hydroacoustic and point-intercept survey methods to assess aquatic plant species abundance patterns and community dominance. Journal of Aquatic Plant Management 53: 121–129. BioBase Paper

Winfield, I. J., van Rijn, J., & Valley, R. D. 2015. Hydroacoustic quantification and assessment of spawning grounds of a lake salmonid in a eutrophicated water body. Ecological Informatics, 30, 235–240. https://doi.org/10.1016/j.ecoinf.2015.05.009. BioBase Paper

Valley, R.D. 2016. Case Study Spatial and temporal variation of aquatic plant abundance : Quantifying change. Journal of Aquatic Plant Management 54: 95–101. BioBase Paper

Sugiyama, S., M. Minowa, D. Sakakibara, P. Skvarca, T. Sawagaki, Y.Ohashi, N. Naito, K. Chikita. 2016. Thermal structure of proglacial lakes in Patagonia. Journal of Geophysical Research: Earth Surface. 121, 2270–2286, doi:10.1002/2016JF004084.

Schooley, J.D. and B.C. Neely 2017. Estimation of paddlefish (Polyodon spathula Walbaum, 1792) spawning habitat availability with consumer-grade sonar. Journal of Applied Icthyology 00:1-9. https://doi.org/10.1111/jai.13565 . BioBase Paper

Yamasaki, S., Tabusa, T., Iwasaki, S., & Hiramatsu, M. 2017. Acoustic water bottom investigation with a remotely operated watercraft survey system. Progress in Earth and Planetary Science, 4(1). https://doi.org/10.1186/s40645-017-0140-y

Howell, A.W. and R.J Richardson 2019. Correlation of consumer grade hydroacoustic signature to submersed plant biomass. Aquatic Botany 155: 45-51. https://doi.org/10.1016/j.aquabot.2019.02.001. BioBase Paper

Helminen, J. T. Linnansaari, M. Bruce, R. Dolson-Edge, R.A. Curry 2019. Accuracy and Precision of Low-Cost Echosounder and Automated Data Processing Software for Habitat Mapping in a Large River. Diversity 2019 11(7). 18pp. https://www.mdpi.com/1424-2818/11/7/116. BioBase Paper

Halmai, Á., A. Gradwohl-Valkay, S. Czigány, J. Ficsor, Z. Á. Liptay, K. Kiss,D. Lóczy, and E. Pirkhoffer. 2020. Applicability of a recreational-grade interferometric sonar for the bathymetric survey and monitoring of the Drava River. ISPRS (International Society for Photogrammetry and Remote Sensing) International Journal of Geo-Information [on-line serial] 9(3):149. https://www.mdpi.com/2220-9964/9/3/149

Torso, K., B.D. Scofield, D.W. Chess. 2020. Variations in aquatic macrophyte phenology across three temperate lakes in the Coeur d’ Alene Basin. Aquatic Botany Article No. 103209. https://doi.org/10.1016/j.aquabot.2020.103209. BioBase Paper

Bethke, B.J. and P.J. Schmalz 2020. Trophic interactions and regulators of abundance of Largemouth bass in Northeastern Minnesota. Minnesota Department of Natural Resources Investigational Report 568. 24 pages BioBase Paper

Hyman, A.C., R.N. Lipcius, R. Gray, D. Bigham Stephens 2021. Influence of salinity on SAV distribution in a series of intermittently connected coastal lakes. Estuarine, Coastal and Shelf Science 260: 107503.  https://doi.org/10.1016/j.ecss.2021.107503. Pdf copy available upon request. BioBase Paper.

Sperry, B.P., J.K. Leary, D. Jones, and J.A. Ferrell 2021. Observations of a submersed field application of florpyrauxifen-benzyl suppressing hydrilla in a small lake in central Florida. Journal of Aquatic Plant Management 59: 20-26. BioBase Paper.

Weinz, A.A., J.K. Matley, N.V. Klinard, A.T. Fisk, and S.F. Colborne. 2021. Performance of acoustic telemetry in relation to submerged aquatic vegetation in a nearshore freshwater habitat. Marine and Freshwater Research 72(7): 1033-1044. https://doi.org/10.1071/MF20245

Gerrin, W.L., B. Haram, C.A. Jennings, G. Brandon, and S.B. Wilde. 2021. Factors affecting movement and habitat use of grass carp in a mainstem reservoir. Fisheries Management and Ecology. 2021:00:1-4.  https://onlinelibrary.wiley.com/doi/abs/10.1111/fme.12517 Pdf copy available upon request. BioBase Paper.

Takoukam, A.K., D.G.E. Gomes, M.V. Hoyer, L.W. Keith-Diagne, R.K. Bonde, R. Francis-Floyd. 2021. African manatee (Trichechus senegalensis) habitat suitability at Lake Ossa, Cameroon, using trophic state models and predictions of submerged aquatic vegetation. Ecology and Evolution 13 pp. BioBase Paper.

Schleppenbach, B.T., G. Matzke, S.L. Shaw, and G.G. Sass. 2022. Fish and Zooplankton Community Responses to the Cessation of Long-Term Invasive Eurasian Watermilfoil (Myriophyllum spicatum) Chemical Treatments in a North-Temperate, USA Lake. Fishes 7: 165. BioBase Paper.

Botrel, M., C. Hudon, P.M. Biron, and R. Maranger. 2023. Combining quadrat, rake, and echosounding to estimate submerged aquatic vegetation biomass at the ecosystem scale. Limnology and Oceanography: Methods. 21: 192-208. doi: 10.1002/lom3.10539

Wróbel, M., Mank, K., Gawrys, R., Krysztofiak-Kaniewska, A., Boczon, A., & Grajewski, S. (2023). The use of low-cost bathymetric methods for the purpose of exploiting mid-forest water reservoirs. International Journal of Hydrology Science and Technology 16(1): 82–92. https://doi.org/10.1504/IJHST.2023.131835
Gary, R. A., Long, J. M., Eachus, B. T., Dzialowski, A. R., & Schooley, J. D. 2024. Factors associated with Paddlefish (Polyodon spathula) restoration success in Oklahoma. Fisheries Management and Ecology, 31(2). https://doi.org/10.1111/fme.12677
Long, J. M., Joyce, P., Bruckerhoff, L. A., Lonsinger, R. C., & Wolfenkoehler, W. 2024. Using down-scan capabilities from recreational-grade side-scan sonar systems to sample paddlefish and evaluate depth use in a reservoir. Fisheries Research 269. https://doi.org/10.1016/j.fishres.2023.106872
Ridgway, J.L, J.A. Madsen, J.R. Fischer, R.D. Calfee, M.R. Acre, D.C. Kazyak. 2024. Sonar as a tool for measuring fish populations: current state of the science and future directions. Fisheries 49 (10): 454-462. https://afspubs.onlinelibrary.wiley.com/doi/epdf/10.1002/fsh.11137

 

Thayer, J., S. Enloe, C. Prince, G. MacDonald, and J. Leary. 2024. Spatial-temporal shifts in submersed aquatic vegetation community structure resulting from a selective herbicide treatment in Lake Sampson, Florida, USA. Lake and Reservoir Management. BioBase Paper

Galvão de Medeiros, T.A., E.J. Botha, F.C. Duarte, G.M. De Mello Baptista, B. S. de Brito Pereira, M. Kampel, and J.C. Sicolí Seoane. 2024. Integrating bathymetry data and high-resolution satellite imagery for benthic habitat mapping in a marine-protected area in Brazil. International Journal of Remote Sensing. 31pp.

Fletcher, T., M.T. Booth, and J.J. Pritt 2024. A comparison of recreational and survey-grade side-scan sonar systems in mapping reservoir fish habitat. North American Journal of Fisheries Management 44:1422-1438.

Cavazos-Alvarez, J. A., Carrasco-Núñez, G., Macías-Medrano, S. E., Mancera-Alejándrez, J., & Valley, R. D. (2025). Integrated sonar-drone geomorphological mapping of maar lakes: Insights into compound maar eruptive histories. Geomorphology, 489, 110002. BioBase Paper

Author: biobasemaps

BioBase is a cloud platform for the automated mapping of aquatic habitats (lakes, rivers, ponds, coasts). Standard algorithms process sonar datafiles (EcoSound Product). Depth and vegetation maps and data reports are rapidly created and stored in a private cloud account for analysis, and sharing. This blog highlights a range of internal and external research, frequently asked questions, feature descriptions and highlights, tips and tricks, and photo galleries.

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